Single miRNA

Cti-MIRN587e

Basic info.

miRNA locus ID
Cti-MIRN587e

miRNA locus accession
PmiREN003489

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01095800.1 3891 4052 +

Comments
A member of family MIRN587

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAAAAATCCGTCGCAAATCC          GGTG A                   CGATG           TT   CG GTA
                      GTCGCTGAAG    G TTTGTCGCTGATCCGTCGC     GTCTGTCGCTG  GGT  C   
                      ||||||||||    | |||||||||||||||||||     |||||||||||  |||  |    
                      CAGCGACTTC    C AGGCAGCGATTAGGCAGTG     TAGGCAGCGAC  TCA  G   
TTGCGTTTAGGCAGTGTTTAGG          --GA -                   -ACAA           TT   TA ACG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.