Cti-MIRN587d

Basic info.

• miRNA locus ID
• Cti-MIRN587d

• miRNA locus accession
• PmiREN003488

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01045821.1  3877  4049  +

• Comments
• A member of family MIRN587

• Confidence level
• 

Secondary strurture and sequence

  GAAAAATCCGTCACTGATCC        AA   G A                  CT  AAGG       G -T G      T     A
                      GTCGCTGA  GGC G TCCGTCGCTGATCCGTCG  GA    CTGTCGT G  T GTCGCG GGAAG 
                      ||||||||  ||| | ||||||||||||||||||  ||    ||||||| |  | |||||| ||||| T
                      CAGCGACT  TCG C AGGCAGCGACTAGGCAGC  CT    GGCAGCA T  G CAGCGT CTTTC 
TTACGTTTAGGCAGCGTTTAGG        --   A -                  AT  -ATA       G TG G      -     A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]