Single miRNA

Cti-MIRN529b

Basic info.

miRNA locus ID
Cti-MIRN529b

miRNA locus accession
PmiREN003487

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01016051.1 5582 5713 +

Comments
A member of family MIRN529

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTCTCCTTTCATTACTGCTG          T               TTTTAT    ATCT   TT
                      TAGCCAATGA TTTTGCGTAATTTTT      ATTT    CAA  
                      |||||||||| |||||||||||||||      ||||    |||  T
                      ATTGGTTGCT AAAACGCATTAGAAA      TAAA    GTT  
AGAAACGAGGCTATAGAAGACT          T               -TACTT    CATT   TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.