Single miRNA

Cti-MIRN553e

Basic info.

miRNA locus ID
Cti-MIRN553e

miRNA locus accession
PmiREN003484

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01300181.1 3790 3962 +

Comments
A member of family MIRN553

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGAGAAGTGATCTCCACCAC                T              GTCACCCTCCTTTAATTGTATCCAC  TCCATGAATCACG
                      TCATCTGGTCAATAAA GCGGTTTTGACCGG                         TC             
                      |||||||||||||||| ||||||||||||||                         ||              
                      AGTAGGCTAGTTATTT TGCTGAAACTGGCC                         TA             
TTACTCTTCATTAGAGGTAGTA                C              -----------AATGCCATCTTCTC  GTGCCTCCTAACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.