Single miRNA

Cti-MIRN553d

Basic info.

miRNA locus ID
Cti-MIRN553d

miRNA locus accession
PmiREN003483

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01268825.1 202 340 +

Comments
A member of family MIRN553

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGAGAAGTGATTTCCACCAC                 NCCAC  TCTATGAATCGCATCAACCCTCCGTG
                      TCATCCGGTCAATAAAG     TC                          
                      |||||||||||||||||     ||                          A
                      AGTAGGCTAGTTATTTC     GC                          
TAATCTTTTACTAGAGGTGGTA                 ----T  CAAAATTGGCCAATGTCACCTGCGCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.