Single miRNA

Cti-MIRN553c

Basic info.

miRNA locus ID
Cti-MIRN553c

miRNA locus accession
PmiREN003482

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01145335.1 3384 3556 +

Comments
A member of family MIRN553

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GGAGAAGTGATCTCCACCAC                           -----C    TCCCCCTGTTTTGATTGTCTCCACCCTCCAT
                      TCATTCGGTTAATAAAGGCGGCTTTGA      CAGG                               
                      |||||||||||||||||||||||||||      ||||                                
                      AGTAGGCTAGTTATTTCTGCCGAAACT      TACT                               
CATCTCTTCACTAGAGGTGGTA                           AGCCAA    ACCTGCGCTAGTGCCTCCTAACTGCGCCAAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.