Cti-MIRN553b

Basic info.

• miRNA locus ID
• Cti-MIRN553b

• miRNA locus accession
• PmiREN003481

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01039658.1  9947  10119  +

• Comments
• A member of family MIRN553

• Confidence level
• 

Secondary strurture and sequence

  AGATAAGTGATTTTCACCAC      A                        ---------TTA G TGGACGCGATCACGGAGGATTGAC
                      TCATCC GTCAATAAAGGCGGCTTTGACCGG            C G                        
                      |||||| ||||||||||||||||||||||||            | |                        G
                      AGTAGG TAGTTATTTCTGCTGAAACTGGCC            T C                        
TTCATCTCTTCACTAGAGGGTA      C                        CAGGGGAGGAAA - ATTAGAAGGGGGAGGGTACTTAGC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]