Single miRNA

Cti-MIRN539d

Basic info.

miRNA locus ID
Cti-MIRN539d

miRNA locus accession
PmiREN003478

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01146841.1 111 236 +

Comments
A member of family MIRN539

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TAAGTAGAGAAGTGATCTCA                     G            N C  CCAC
                      ACCACTCATCCGGTCAATAAA GCGGCTTTGACC G GT    
                      ||||||||||||||||||||| |||||||||||| | ||     
                      TGGTGAGTAGGCCAGTTATTT CGCTGAAACTGG C CA    
GGTACACCAAACAACAAAAAAA                     G            - -  ATCC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.