Single miRNA

Cti-MIR166h

Basic info.

miRNA locus ID
Cti-MIR166h

miRNA locus accession
PmiREN003473

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01172019.1 7557 7705 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATTAAGCAGTTAGTTTGTGG      TT G    C       AT     AATTGCA   GAAAATTGATTTTCTC
                      GGGATG  G CTGG TCGATGC  TCACT       GGA                
                      ||||||  | |||| |||||||  |||||       |||                T
                      CCTTAC  C GACC GGCTACG  AGTGG       AAG                
TATAATCGTTTCCCCAAACTCT      TT G    A       GC     ----AAA   ACTTCCTTAAAATCTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.