Cti-MIRN517f

Basic info.

• miRNA locus ID
• Cti-MIRN517f

• miRNA locus accession
• PmiREN003471

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01263259.1  3521  3722  -

• Comments
• A member of family MIRN517

• Confidence level
• 

Secondary strurture and sequence

                                A      GAAA      C     A   CTT   G  T   C  CCCCTCTA   --  A  TCCTCTCATGAATCGC
  TGTGAACCACTTTTTGGTTGTGAACGTGAG ACAGCC    GCGCGA ATGTG CGG   TGA TG GGT CC        ATT  CA TG                
  |||||||||||||||||||||||||||||| ||||||    |||||| ||||| |||   ||| || ||| ||        |||  || ||                G
  ACACTTGGTGAAAAACCAACACTTGCACTC TGTCGG    TGCGCT TGCAC GCC   ACT AT CCG GG        CAG  CA GT                
TT                              C      ---N      A     C   --T   G  -   C  ------TA   TC  -  TGCCGCCTACTGATCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]