Cti-MIRN517e

Basic info.

• miRNA locus ID
• Cti-MIRN517e

• miRNA locus accession
• PmiREN003468

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01249016.1  83  322  +

• Comments
• A member of family MIRN517

• Confidence level
• 

Secondary strurture and sequence

AATAC      A         A          A    C   A      A          -T   --GAA    -        ----           TACTGAATAAAGCTTAGTCGTACTCTGA
     GAACCG TTTTTCATT TGAACGTGAG ACAG CGA AGCGTG CACGTGGCAA  CTG     CGTG TGTGGCTT    AGCTTTATTCA                            
     |||||| ||||||||| |||||||||| |||| ||| |||||| ||||||||||  |||     |||| ||||||||    |||||||||||                             
     CTTGGT AAAAAGTAA ACTTGCACTC TGTT GCT TTGCAC GTGCACCGTT  GAC     GCGC GTATCGAA    GTCATACTTAT                            
  ACA      G         C          C    A   C      G          TT   AGAAA    C        ATAA           TTAGAAATAAGTATGACNCAGCGGACCC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]