Single miRNA

Cti-MIRN584

Basic info.

miRNA locus ID
Cti-MIRN584

miRNA locus accession
PmiREN003466

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01235600.1 13666 13799 -

Comments
A member of family MIRN584

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AACAGGGATTAA       C   C        GA         ACAC  ---       CA     GGCC
              AGAAGTC TGT GCAGGAAA  TGGCACCTG    GC   CATGCTG  GTTTC    
              ||||||| ||| ||||||||  |||||||||    ||   |||||||  |||||     
              TCTTCAG ACA CGTTCTTT  ACCGTGGAC    CG   GTACGAC  CAAAG    
TTTTCCTTACATTC       T   T        -A         --AA  ACA       --     ACGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.