Single miRNA

Cti-MIRN581b

Basic info.

miRNA locus ID
Cti-MIRN581b

miRNA locus accession
PmiREN003460

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01223849.1 4165 4295 -

Comments
A member of family MIRN581

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CA       A  C   A             A           CCA     CAA  T       AT
    AGAAGTA AT AAG TTGATGTGTTTGT AATGACCAAGA   GCGAT   AA TTGGGCA  
    ||||||| || ||| ||||||||||||| |||||||||||   |||||   || |||||||   
    TCTTCAT TA TTC AACTACACAAACA TTACTGGTTCT   TGTTA   TT AGCCTGT  
CCAC       A  C   A             C           -AC     CCG  C       AT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.