Single miRNA

Cti-MIRN573b

Basic info.

miRNA locus ID
Cti-MIRN573b

miRNA locus accession
PmiREN003456

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01193420.1 2195 2267 +

Comments
A member of family MIRN573

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AACCACTTTTTAGTTGTGAAC  -     C   C     C  GCCA
                     GT GAGGA AAT CAGAG GC    
                     || ||||| ||| ||||| ||     
                     CA CTTTT TTA GTCTT CG    
                TGATT  G     T   A     A  GTGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.