Cti-MIRN578

Basic info.

• miRNA locus ID
• Cti-MIRN578

• miRNA locus accession
• PmiREN003453

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01170375.1  2965  3217  +

• Comments
• A member of family MIRN578

• Confidence level
• 

Secondary strurture and sequence

G     CA        -   TT  C      --AG    T     TAACC     GTTGTA   AATA      --    -  GTGTGCTCTTAAATGGACACATCTTAGAGGATGGAATTCTGGAGGCAGAAAGA
 TCTAG  CAAGCCAG GGT  TG AATCGT    GCTA GGCTT     GAGGT      CCC    TGATCA  CCTT TA                                                     
 |||||  |||||||| |||  || ||||||    |||| |||||     |||||      |||    ||||||  |||| ||                                                      
 AGATT  GTTTGGTT CCG  AC TTAGTA    CGGT TCGAA     TTTCG      GGG    ACTAGT  TACA CA                                                     
      -C        A   --  -      ATAA    -     ---TA     ------   ---A      AG    A  TATATTGATGTAATCCAAGTGTTTCAAAGGGAAACTAGTCGAAGAACTTGTTC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]