Cti-MIRN566

Basic info.

• miRNA locus ID
• Cti-MIRN566

• miRNA locus accession
• PmiREN003434

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01460266.1  609  843  -

• Comments
• A member of family MIRN566

• Confidence level
• 

Secondary strurture and sequence

TAT    -----   G  A    CC               C     C       -  GATACAAAG              -            --------------   GTTGTGAATGTAAAAAAATCTGAA
   ATCC     AGG TT GGTT  CGTGAGACTAGCATG TTTTG GAGACCA GT         TTTTTATATTTGAA CTTCATAGCGAA              TTT                        
   ||||     ||| || ||||  ||||||||||||||| ||||| ||||||| ||         |||||||||||||| ||||||||||||              |||                         
   TGGG     TCT AA TCGA  GCACTTTGGTTGTAC AAAAC CTCTGGT CA         AAAAATGTGAACTT GAAGTATCGTTT              TGG                        
       ATATA   G  C    AT               A     A       T  ---------              T            TGCGACACTTTCAT   AAGTACCATAAAAACGACACTTAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]