Single miRNA

Cti-MIRN559c

Basic info.

miRNA locus ID
Cti-MIRN559c

miRNA locus accession
PmiREN003431

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01305767.1 1268 1350 +

Comments
A member of family MIRN559

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CTCAATGGGGGCAGTATA    -          T GAA   GTA
                  CCGG TTTAGGCTTG G   GGT   
                  |||| |||||||||| |   |||    
                  GGCC AAGTTCGAAC C   CCA   
   AGACCAACGAGTGGG    T          T -AA   ACA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.