Cti-MIRN563

Basic info.

• miRNA locus ID
• Cti-MIRN563

• miRNA locus accession
• PmiREN003428

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01296033.1  6700  6951  -

• Comments
• A member of family MIRN563

• Confidence level
• 

Secondary strurture and sequence

CACTCTTTGCTGTGTCCCCT   -        AGGTA    AG    -TC    ACCCCAATGCATATCTTAAGACGCTGCATCCATGTGACAGAAGTGTCACTTAAATGGCTATCAAGACTTCCACGA
                    TGG GATCATGA     GCTT  TCCC   TGCA                                                                           
                    ||| ||||||||     ||||  ||||   ||||                                                                            
                    ACC CTAGTACT     CGAA  AGGG   TGTG                                                                           
   CTTGTTTCTTAAGACCT   T        ----A    --    CAA    TGTACTTTTAGAGCATAGAGAGCAACCGATAACGCTGCTCCCACCACTCTTGCAAGAACACATACTCATACGTAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]