Single miRNA

Cti-MIRN562

Basic info.

miRNA locus ID
Cti-MIRN562

miRNA locus accession
PmiREN003427

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01293179.1 6824 6976 -

Comments
A member of family MIRN562

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TGCCAGGTGGGTGGTCAGTA       - T  T     C - --A       ACTC      CA  C     GAGAAGC
                      TAGTCGT C GA AGAAG G G   AGTTTAC    TTGGTA  AG GGATG       
                      ||||||| | || ||||| | |   |||||||    ||||||  || |||||       A
                      ATCGGCA G CT TTTTC C C   TTAGGTG    GACCAT  TC CCTGC       
AGTATTTTGAAAGGTTACTTTT       A T  -     A T ATA       GTTT      --  -     AACAGCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.