Cti-MIRN556b

Basic info.

• miRNA locus ID
• Cti-MIRN556b

• miRNA locus accession
• PmiREN003426

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01283470.1  1732  1985  -

• Comments
• A member of family MIRN556

• Confidence level
• 

Secondary strurture and sequence

TCG     --GAAT   -----------     C    -   C     ----T       --     --C      AGATAGAAAAGCCACTCATTAGCTGCATCTACTAGCGAGAATGGGAATGCCTTCAAATTTA
   TTGAG      GCT           CTTGC ATCT GTT CCATG     GGTGATG  GATCC   GGTGGC                                                             
   |||||      |||           ||||| |||| ||| |||||     |||||||  |||||   ||||||                                                             G
   AACTC      TGA           GAATG TGGA CAA GGTAC     CTATTGC  CTAGG   GTTCGT                                                             
        GAATTT   TCAAATTAAGT     A    G   A     CAGAT       TT     CAT      ATACTGATATAAGGTATACCACACGAACCCTTACTTCGGTGTTCCGTGTTCGTATCTTATG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]