Single miRNA

Cti-MIRN560

Basic info.

miRNA locus ID
Cti-MIRN560

miRNA locus accession
PmiREN003423

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01252847.1 3731 3814 -

Comments
A member of family MIRN560

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATCTAATCTATGTTGTTATA     ATC   -  A    CCT
                      GGATA   CAT GT CTTG   
                      |||||   ||| || ||||    
                      CCTGT   GTA CA GAAC   
TTACGGATGTGTGTATGTGGTA     GCA   G  -    TTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.