Cti-MIRN558

Basic info.

• miRNA locus ID
• Cti-MIRN558

• miRNA locus accession
• PmiREN003420

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01163883.1  5949  6154  +

• Comments
• A member of family MIRN558

• Confidence level
• 

Secondary strurture and sequence

  CA    T    CC             A           C                 T      CC       A  -A   C               -    AG
    TGTT TGTC  TAAAGGATTATGA GGTGATCCAAT CATTGACAATCCCGGTG ATATCT  AGGTATT GA  CCA GTGAGACTTGTGCGG ACAA  
    |||| ||||  ||||||||||||| ||||||||||| ||||||||||||||||| ||||||  ||||||| ||  ||| ||||||||||||||| ||||   
    ACAA ACAG  GTTTCCTAATACT CCATTAGGTTA GTAACTGTTAGGGTTAC TATAGA  TCTGTAG CT  GGT CACTCTGAACGTGTT TGTT  
AGGA    C    AA             C           A                 C      AC       A  CG   A               A    TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]