Cti-MIRN556a

Basic info.

• miRNA locus ID
• Cti-MIRN556a

• miRNA locus accession
• PmiREN003418

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01147982.1  9576  9718  +

• Comments
• A member of family MIRN556

• Confidence level
• 

Secondary strurture and sequence

TTCT   T      ----TTCCA      -        AGC     CCCCA    TACCAT     -    ----    AT
    GCT GAGGCT         CACTTG TACCTTGT   TTCAT     AGCT      GTGAA ACTC    AGTC  
    ||| ||||||         |||||| ||||||||   |||||     ||||      ||||| ||||    ||||   
    TGA TTTTGG         GTGAAT ATGGAGCA   AGGTA     TCGA      CGCTT TGAG    TTAG  
  CT   T      CCAAATTAA      G        --A     CCATA    -----T     C    CATT    TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]