Cti-MIRN543b

Basic info.

• miRNA locus ID
• Cti-MIRN543b

• miRNA locus accession
• PmiREN003415

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01043170.1  28  266  +

• Comments
• A member of family MIRN543

• Confidence level
• 

Secondary strurture and sequence

CA                     A              A    GC          -             A              --------------CA  -    ATA G     -    A   CGGA
  AATGAGAAGTGCTAAAAAAAT CGAAGTAGAGAAGT ATCT  ACCACTCATC CGGTCAATAAAGG GGCTTTGATCGGTC                TC ACTC   C GTGGA CGTG TCA    
  ||||||||||||||||||||| |||||||||||||| ||||  |||||||||| ||||||||||||| ||||||||||||||                || ||||   | ||||| |||| |||     
  TTATTCTTCACGATTTTTTTA GCTTCATCTCTTCA TAGA  TGGTGAGTAG GCCAGTTGTTTCC CCGAAACTGGCCAG                AG TGGG   G TACTT GCGC AGT    
                       C              C    GT          A             G              AGGGGGAAATTATTAG  A    -AG G     A    -   TAGG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]