Cti-MIRN550

Basic info.

• miRNA locus ID
• Cti-MIRN550

• miRNA locus accession
• PmiREN003410

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01024937.1  5285  5423  +

• Comments
• A member of family MIRN550

• Confidence level
• 

Secondary strurture and sequence

  ACAAAAGATCCT   CA    AAA  C   -   -      --------       TC  C      C   ATGTT
              TGC  TGCC   AT TGA GAT CTTGGC        ATTCATT  TG ATCTAA AAG     
              |||  ||||   || ||| ||| ||||||        |||||||  || |||||| |||      
              ACG  ATGG   TG ACT CTA GAGCCG        TAAGTAG  AC TAGATT TTC     
CTAACGAGCTCCCT   AA    --A  T   T   A      ATTCCTAT       -C  -      -   GATCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]