Single miRNA

Cti-MIRN549

Basic info.

miRNA locus ID
Cti-MIRN549

miRNA locus accession
PmiREN003409

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01461974.1 361 476 +

Comments
A member of family MIRN549

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TCA    C  C     G  C     G     G          CATCA    T  ATA
      TGCA TG CGGCG CT TTAAA CTCAA AACACATCGT     TGGA GT   
      |||| || ||||| || ||||| ||||| ||||||||||     |||| ||   T
      ATGT AC GCCGC GA GATTT GAGTT TTGTGTAGCA     ACCT CA   
TAACTA    C  T     -  A     A     G          TCACA    -  ATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.