Single miRNA

Cti-MIRN547

Basic info.

miRNA locus ID
Cti-MIRN547

miRNA locus accession
PmiREN003406

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01294619.1 1051 1167 -

Comments
A member of family MIRN547

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GATGAAG       ---                                          A
       TTAGGGG   ACACTTTGAAGGAGTGGAATATATTAGAGTGGATAGTGTTGA 
       |||||||   |||||||||||||||||||||||||||||||||||||||||| G
       AATTTCC   TGTGAAACTTCCTCACCTTATATAATCTCACCTATCACAACT 
 AGGAGG       AGA                                          T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.