Cti-MIRN539c

Basic info.

• miRNA locus ID
• Cti-MIRN539c

• miRNA locus accession
• PmiREN003405

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01036447.1  4242  4424  -

• Comments
• A member of family MIRN539

• Confidence level
• 

Secondary strurture and sequence

   GAAGT    AA  A    CC                 A     C  C         GTCACCCTCCTTTAA    CTCCACCCTCCATGAATC
        AGAG  GT ATCT  ATCACTCATCCGGTCAA AAAGG GG TTTGACCGG               TCGT                  
        ||||  || ||||  ||||||||||||||||| ||||| || |||||||||               ||||                   
        TCTC  CA TAGA  TGGTGAGTAGGCCAGTT TTTCC CC AAACTGGCC               GCGC                  
TCTCTCTC    -N  C    AA                 A     A  A         -----AATGTCACCT    TAGTGCTTCTTAACTGCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]