Cti-MIRN540c

Basic info.

• miRNA locus ID
• Cti-MIRN540c

• miRNA locus accession
• PmiREN003404

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01292236.1  310  441  +

• Comments
• A member of family MIRN540

• Confidence level
• 

Secondary strurture and sequence

AA       T         G              G               T            AACA
  TAATCAT TATTATGCA ACTGCATAACACAG ACTCGGTATTATGCA ACTGCATAACAC    
  ||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||     
  ATTAGTA ATAATACGT TGACGTATTGTGTT TGAGTCATAATACGT TGACGTATTGTG    
         C         A              G               T            ACTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]