Single miRNA

Cti-MIRN546

Basic info.

miRNA locus ID
Cti-MIRN546

miRNA locus accession
PmiREN003403

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01281071.1 1040 1134 +

Comments
A member of family MIRN546

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ACCCCTCATCC         -----   -CC     -C       TCCTTCC
           GATGACTAT     GCC   TCATC  ATGTACG       
           |||||||||     |||   |||||  |||||||       C
           CTACTGATA     CGG   AGTAG  TACATGT       
   CACACCTA         CTCTC   ATC     CC       GCCTACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.