Cti-MIRN540a

Basic info.

• miRNA locus ID
• Cti-MIRN540a

• miRNA locus accession
• PmiREN003395

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01030222.1  1855  1955  +

• Comments
• A member of family MIRN540

• Confidence level
• 

Secondary strurture and sequence

AA                 G            A   CT G  A     CAT
  TAATCATGTATTATGCA ACTGCATAACAC GGA  C GT TTATG   
  ||||||||||||||||| |||||||||||| |||  | || |||||   A
  ATTAGTACATAATACGT TGACGTATTGTG CTT  G CA AATAC   
                   A            A   AC A  C     ATC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]