Cti-MIRN538

Basic info.

• miRNA locus ID
• Cti-MIRN538

• miRNA locus accession
• PmiREN003393

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01157746.1  79  265  +

• Comments
• A member of family MIRN538

• Confidence level
• 

Secondary strurture and sequence

CCTGGAAACATGGCTACT         A            A     TAA  ---C  GC         AA   CAT       C    GTTA  GT
                  GGTCCGAGT AAGATAGGCAAC TGATA   GA    CC  CAAATGCCA  CAT   TTTTATA GGTC    TG  
                  ||||||||| |||||||||||| |||||   ||    ||  |||||||||  |||   ||||||| ||||    ||   
                  CCAGGCTCA TTCTATCCGTTG GCTAT   CT    GG  GTTTACGGT  GTA   AAAATAT CCGG    AC  
  GCTCGCTGAAGCCAAN         C            G     TTA  ATTA  AT         TG   ATT       T    AGCC  GT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]