Single miRNA

Cti-MIRN530

Basic info.

miRNA locus ID
Cti-MIRN530

miRNA locus accession
PmiREN003385

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01461661.1 1319 1448 +

Comments
A member of family MIRN530

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GGAT  -T            T    A    T    -          ATTAAGAAAT      G       ATG
    GA  CTGCAAGTAATG GTGG ATGG CGGA TTGGAAAGAA          GATTCT TTTTCTG   
    ||  |||||||||||| |||| |||| |||| ||||||||||          |||||| |||||||    
    CT  GGTGTTTATTAT CGCC TACC GCCT AACCTTTCTT          TTGAGA AGAAGAC   
   T  TT            T    G    C    T          ----------      -       AAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.