Cti-MIRN528

Basic info.

• miRNA locus ID
• Cti-MIRN528

• miRNA locus accession
• PmiREN003382

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01306977.1  1976  2184  +

• Comments
• A member of family MIRN528

• Confidence level
• 

Secondary strurture and sequence

 CAA      -TTAC                 A             C  G        CCA  CA  -TTC    AAGTG   CCACAA      G  C   AA  AC
    TTTTTA     AAAATAGCCAAGAAAAC CAAGTCAATGATG AA ACACTTTT   TG  GT    TGAC     GAC      TTTGTG CA TGA  GC  
    ||||||     ||||||||||||||||| ||||||||||||| || ||||||||   ||  ||    ||||     |||      |||||| || |||  ||   
    AAGAGT     TTTTATCGGTTTTTTTG GTTCAGTTACTGC TT TGTGAAAA   AC  CG    GCTG     CTG      AAACAC GT ACT  CG  
CAAA      CCTTT                 C             T  G        ACA  AC  TAAT    --AAA   AACTAA      -  A   -A  CA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]