Single miRNA

Cti-MIRN527

Basic info.

miRNA locus ID
Cti-MIRN527

miRNA locus accession
PmiREN003381

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01303640.1 1107 1314 +

Comments
A member of family MIRN527

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GAATA          A           G    C               GTA      G --T   -T    -  -       CATGCCAGGTGTGCATACCGGACAAAT
     CCTGGTAACC TTCATCTGGAC GTAT TACATGTGCATACAA   ACTGAA C   GGT  TTTG GT CTGTATG                           
     |||||||||| ||||||||||| |||| |||||||||||||||   |||||| |   |||  |||| || |||||||                            
     GGACTATTGG AAGTAGATCTG CATA ATGTATACGTATGTT   TGATTT G   TCG  AAAC GG TGTACGT                           
  GTG          C           A    C               ---      G TAT   TT    A  T       GCATACGTACGTTCATTTGGCATTCGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.