Cti-MIRN520b

Basic info.

• miRNA locus ID
• Cti-MIRN520b

• miRNA locus accession
• PmiREN003375

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01296719.1  4108  4355  +

• Comments
• A member of family MIRN520

• Confidence level
• 

Secondary strurture and sequence

      CTTCAATC                         AG                --      CTCA        --CT    -   GC   CCCA       C        A             TG
              ACTTGTATGCACATGTGCATACCGT  AGATGAATGGTTATTA  GTGTTT    GTTTTTCA    TTTT TGG  TTC    TGAACCT ACTCTATA ATGTGTATATATA  
              |||||||||||||||||||||||||  ||||||||||||||||  ||||||    ||||||||    |||| |||  |||    ||||||| |||||||| |||||||||||||   
              TGAACATATGTGTACACGTATGGCA  TCTACTTGCCAATAGT  CACAAG    TAAAAAGT    AAAA ACC  AAG    ACTTGGA TGGGATAT TATATATGTATGT  
TATGGCCTTTTTAA                         GG                TC      AAAC        AAAT    C   AA   -ACA       C        A             AT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]