Single miRNA

Cti-MIRN520a

Basic info.

miRNA locus ID
Cti-MIRN520a

miRNA locus accession
PmiREN003371

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01277686.1 6819 6985 -

Comments
A member of family MIRN520

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ACCC   T  -C    -   G       C               ---       AGTTGTTTTTGGTTTTCAGGAAACCCCCAAGT
    TTG GA  CACC GTT ATCTGGA GGTATGCACATGTGT   TTTTTGG                                
    ||| ||  |||| ||| ||||||| |||||||||||||||   |||||||                                 
    GAC CT  GTGG CAA TAGACCT CCATACGTGTACACG   GGTACGT                                
TTTT   T  TT    A   G       A               TAT       AATACGTATTTTTGGTTTTTTGTGAAAGTTAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.