Single miRNA

Cti-MIRN518a

Basic info.

miRNA locus ID
Cti-MIRN518a

miRNA locus accession
PmiREN003369

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01274941.1 1243 1368 +

Comments
A member of family MIRN518

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                      CTTTAATCGATACTA          G                   T  A  TTCTTAA
                 TGTTG               TACCAAAGGA TATACATCGGATTTTTTTA GA TC       
                 |||||               |||||||||| ||||||||||||||||||| || ||       T
                 ATAAC               ATGGTTTCCT ATATGTGGCTTAAGAAAAT CT AG       
TAGATTTGTCTTTATAT     ---------------          -                   -  -  CTAACGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.