Single miRNA

Cti-MIRN517a

Basic info.

miRNA locus ID
Cti-MIRN517a

miRNA locus accession
PmiREN003368

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01273349.1 1210 1368 +

Comments
A member of family MIRN517

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AATGTGAATCACTTTTT               A        AAA               --CT   A       CCCCCCCCCTTTAAT   A  CCT
                 GGTTGTGAACGTGAG ACAGCCGA   CGCGATACGTGGCGG    TTG GTGTGAT               TCA TG   
                 ||||||||||||||| ||||||||   |||||||||||||||    ||| |||||||               ||| ||    
                 CCAACACTTGCACTC TGTCGGCT   GCGCTGTGCACCGCC    GAT CGCGCTA               AGT AC   
                                C        CTC               TACT   A       ---------------   -  CCA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.