Single miRNA

Cti-MIRN516a

Basic info.

miRNA locus ID
Cti-MIRN516a

miRNA locus accession
PmiREN003367

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01121238.1 150 257 +

Comments
A member of family MIRN516

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

        AGA  CG   C   GN    A             CAAA   -     TGTT
     GCG   GC  GTC GCC  ACGA TTGGTGCGGCGGC    TCC CGGGC    
     |||   ||  ||| |||  |||| |||||||||||||    ||| |||||    G
     CGC   CG  CGG TGG  TGCT AGCTGCGCTGCCG    AGG GCTCG    
ATTGC   ATG  -A   T   --    -             -TAG   T     TATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.