Single miRNA

Cti-MIR6108b

Basic info.

miRNA locus ID
Cti-MIR6108b

miRNA locus accession
PmiREN003364

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01214340.1 585 775 -

Comments
A member of family MIR6108

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TAAGGAAAAAAAAATTAATA       A                  CTCGATCACTTTTAATCTCATGGCCATCCATGAATTACGCAAGAATTG
                      TGAGAAG GTAAGAAGGGATCTAGTG                                                
                      ||||||| ||||||||||||||||||                                                A
                      ATTCTTC CATTCTTCTCTAGAAATG                                                
ATAAATTTACTAATCCAAATTC       C                  GCAACTTAGTTAGGATCAACTTCTAGTCGTGATTACTCTACGTGGCCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.