Single miRNA

Cti-MIR536

Basic info.

miRNA locus ID
Cti-MIR536

miRNA locus accession
PmiREN003362

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01124682.1 1167 1287 -

Comments
A member of family MIR536

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

T     --     -                 A      A              TATATA    CG
 TAAGA  GGGTG GTCTTTAGGCGCACACA GTGTGG ACCATATATATATA      TATG  
 |||||  ||||| ||||||||||||||||| |||||| ||||||||||||||      ||||   
 ATTCT  CCCAC TAGAAATCTGCGTGTGT CGCACC TGGTATATATGTAT      GTAC  
      CG     G                 -      G              ----TG    CA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.