Cti-MIR396e

Basic info.

• miRNA locus ID
• Cti-MIR396e

• miRNA locus accession
• PmiREN003354

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01277585.1  324  471  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  CGA    G  C        C            C          T    TTT     ATCTTCCAGATCTGTATC
     TGGT CT TTTCTATT TTCCACGGCTTT TTGAACTGCA GGGT   GATCT                  
     |||| || |||||||| |||||||||||| |||||||||| ||||   |||||                  T
     ACTA GA AGAGATAG AGGGTGTCGAAA AACTTGGCGT TCTA   ATATG                  
GTAAA    G  A        A            T          T    ---     TATGTATATATATATATA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]