Single miRNA

Cti-MIR396d

Basic info.

miRNA locus ID
Cti-MIR396d

miRNA locus accession
PmiREN003353

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01078943.1 2414 2560 -

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAATCCCGAGA                               T  -AAT    ATA       AGCTTTT     T
             GTCATGTTTTTCCACAGCTTTCTTGAACTTC GT    TTAT   TGAATTC       GAGAA 
             ||||||||||||||||||||||||||||||| ||    ||||   |||||||       ||||| C
             CGGTACAAAAGGGTGTTGAAAGAGCTTGAAG CA    AATG   ACTTAAG       TTCTT 
TAGGTCATCTTAA                               -  AATT    --A       ----AAT     T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.