Single miRNA

Cti-MIR396c

Basic info.

miRNA locus ID
Cti-MIR396c

miRNA locus accession
PmiREN003352

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01209959.1 5027 5165 -

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AA                 C            C          -T    -------------     TT     G
    TTGGTTCTCTTTCTGTT TTCCACAGCTTT TTGAACTGCA  GGTT             CAATG  GATCT 
    ||||||||||||||||| |||||||||||| ||||||||||  ||||             |||||  ||||| T
    GACTAGGAGGGAGATAG AGGGTGTCGAAA AACTTGACGT  CTAA             GTTGT  CTAGG 
TCAC                 A            C          TT    ATTCGGTTTTTTT     GT     T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.