Cti-MIR396b

Basic info.

• miRNA locus ID
• Cti-MIR396b

• miRNA locus accession
• PmiREN003351

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01144649.1  3263  3388  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  GAC  C G           C            C          --TATG CT       CTTG
     TG T CTTTTTCTGTT TTCCACAGCTTT TTGAACTGCA      G  TTCAGAT    
     || | ||||||||||| |||||||||||| ||||||||||      |  |||||||     
     AC A GAAAGAGACAG AGGGTGTCGAAA AACTTGGCGT      C  AAGTTTA    
ATAAA  T G           A            T          TTCTAA TT       TTTC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]