Single miRNA

Cti-MIR396a

Basic info.

miRNA locus ID
Cti-MIR396a

miRNA locus accession
PmiREN003350

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01260106.1 260 413 +

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TATACAAGTCCTAAT                                 ---C       --AT         C      G
               CATGTTTTTCCACAGCTTTCTTGAACTTTTTAA    AAACGCA    GTAACCGAT CAGATC 
               |||||||||||||||||||||||||||||||||    |||||||    ||||||||| |||||| A
               GTACAGGAGGGTGTCGAAAGAACTTGAAAAGTT    TTTGCGT    CATTGGCTA GTCTAG 
  GGGTCCTAGAGCA                                 TACT       ATGT         A      T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.