Cti-MIR393c

Basic info.

• miRNA locus ID
• Cti-MIR393c

• miRNA locus accession
• PmiREN003343

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01275921.1  95  231  -

• Comments
• A member of family MIR393

• Confidence level
• 

Secondary strurture and sequence

  CATTGCAGCAGGT                       T      TT     T  AT C   TC  TT AT
               GGAAGCTTCCAAAGGGATCGCAT GATCCA  TTTGT GA  T AGA  CA  G  
               ||||||||||||||||||||||| ||||||  ||||| ||  | |||  ||  |   
               CCTTTGAAGGTTTCTCTAGCGTA CTAGGT  AAATA CT  A TCT  GT  C  
ACCTCGCGGTGCCTG                       -      -T     -  CT C   TA  TT TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]