Single miRNA

Cti-MIR393a

Basic info.

miRNA locus ID
Cti-MIR393a

miRNA locus accession
PmiREN003341

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01129628.1 10906 11037 +

Comments
A member of family MIR393

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CATAGC       T       C            C    T        G  ---T         TGT TT
      GGCAACT AAGGAGG ATCCAAAGGGAT GCAT GATCCCGA TC    CATATATAT   C  
      ||||||| ||||||| |||||||||||| |||| |||||||| ||    |||||||||   |   
      TCGTTGG TTCCTCC TAGGTTTCCCTA CGTA CTAGGGTT AG    GTATATATA   G  
    CT       C       T            T    -        A  TCAT         TAT TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.