Cti-MIR172c

Basic info.

• miRNA locus ID
• Cti-MIR172c

• miRNA locus accession
• PmiREN003331

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01278387.1  414  592  +

• Comments
• A member of family MIR172

• Confidence level
• 

Secondary strurture and sequence

ACAAC       TC  T      G      T         A   -AA   TC  TTTTT    T                 C       ACTT
     AGTCAGT  TT CTGTTG AGCATC TCAAGATTC CAA   GAC  CA     AGGG TTCATGAGTTGTTTTTT TTTTTCC    
     |||||||  || |||||| |||||| ||||||||| |||   |||  ||     |||| ||||||||||||||||| |||||||     
     TCGGTCA  AA GGTGAC TCGTAG AGTTCTAAG GTT   TTG  GT     TCCC GGGTATTTAGTGAAAGA AAAAAGG    
  TAA       TT  C      G      T         A   CGG   TT  ---TT    T                 -       AAAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]